TXM Publications

	Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Stuart Roebuck, Richard Tobin, and Xinglong Wang. 2008a. Assisted curation: Does text mining really help. In Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, and Teri E. Klein, editors, BIOCOMPUTING 2008. Proceedings of the Pacific Symposium on Biocomputing, Kohala Coast, Hawaii, USA. [ bib \| .pdf ]
	Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Richard Tobin, and Xinglong Wang. 2008c. The ITI TXM corpora: Tissue expressions and protein-protein interactions. In Proceedings of the Workshop on Building and Evaluating Resources for Biomedical Text Mining at the 6th International Conference on Language Resources and Evaluation (LREC 2008), Marrakech, Morocco. [ bib \| .pdf ]
	Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Richard Tobin, and Xinglong Wang. 2008b. Automating curation using a natural language processing pipeline. Genome Biology, 9(Suppl 2):S10. [ bib \| http ]
	Barry Haddow. 2008. Using automated feature optimisation to create an adaptable relation extraction system. In Proceedings of BioNLP 2008, Columbus, Ohio. [ bib \| .pdf ]
	Barry Haddow and Beatrice Alex. 2008. Exploiting multiply annotated corpora in biomedical information extraction tasks. In Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008), Marrakech, Morocco. [ bib \| .pdf ]
	Florian Leitner, Martin Krallinger, Carlos Rodriguez-Penagos, Jörg Hakenberg, Conrad Plake, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hsi-Chuan Hung, William W. Lau, Calvin A. Johnson, Rune Sætre, Kazuhiro Yoshida, Yan Hua Chen, Sun Kim, Soo-Yong Shin, Byoung-Tak Zhang, William A. Baumgartner Jr., Lawrence Hunter, Barry Haddow, Michael Matthews, Xinglong Wang, Patrick Ruch, Frédéric Ehrler, Arzucan Özgür, Günes Erkan, Dragomir R. Radev, Michael Krauthammer, TahiBinh Luong, Robert Hoffmann, Chris Sander, and Alfonso Valencia. 2008. Introducing meta-services for biomedical information extraction. Genome Biology, 9(Suppl 2):S6. [ bib \| http ]
	Alexander A. Morgan, Zhiyong Lu, Xinglong Wang, Aaron M. Cohen, Juliane Fluck, Patrick Ruch, Anna Divoli, Katrin Fundel, Robert Leaman, Jörg Hakenberg, Chengjie Sun, Heng-hui Liu, Rafael Torres, Michael Krauthammer, William W. Lau, Hongfang Liu, Chun-Nan Hsu, Martijn Schuemie, and Lynette Hirschman. 2008. Overview of BioCreative II gene normalization. Genome Biology, 9(Suppl 2):S3. [ bib \| http ]
	Larry Smith, Lorraine K. Tanabe, Rie Johnson (nee Ando), Cheng-Ju Kuo, I-Fang Chung, Yu-Shi Lin, Roman Klinger, Christoph M. Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A. Struble, Richard J. Povinelli, Andreas Vlachos, William A. Baumgartner Jr., Lawrence Hunter, Bob Carpenter, Richard Tzong-Han Tsai, Hong-Jie Dai, Feng Liu, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafael Torres, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel Maña López, Jacinto Mata-Vázquez, and W. John Wilbur. 2008. Overview of BioCreative II gene mention recognition. Genome Biology, 9(Suppl 2):S2. [ bib \| http ]
	Xinglong Wang and Claire Grover. 2008. Learning the species of biomedical named entities from annotated corpora. In Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008), Marrakech, Morocco. [ bib \| .pdf ]
	Xinglong Wang and Michael Matthews. 2008b. Species disambiguation for biomedical term identification. In Proceedings of BioNLP 2008, Columbus, Ohio. [ bib \| .pdf ]
	Xinglong Wang and Michael Matthews. 2008a. Comparing usability of matching techniques for normalising biomedical named entities. In Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, and Teri E. Klein, editors, BIOCOMPUTING 2008. Proceedings of the Pacific Symposium on Biocomputing, Kohala Coast, Hawaii, USA. [ bib \| .pdf ]
	Beatrice Alex, Barry Haddow, and Claire Grover. 2007. Recognising nested named entities in biomedical text. In Proceedings of BioNLP 2007, Prague, Czech Republic. [ bib \| .pdf ]
	Claire Grover, Barry Haddow, Ewan Klein, Michael Matthews, Leif Arda Nielsen, Richard Tobin, and Xinglong Wang. 2007. Adapting a relation extraction pipeline for the BioCreAtIvE II task. In Proceedings of the BioCreAtIvE II Workshop 2007, Madrid, Spain. [ bib \| .pdf ]
	Barry Haddow and Michael Matthews. 2007. The extraction of enriched protein-protein interactions from biomedical text. In Proceedings of BioNLP 2007, Prague, Czech Republic. [ bib \| .pdf ]
	Xinglong Wang. 2007. Rule-based protein term identification with help from automatic species tagging. In Proceedings of the Conference on Intelligent Text Processing and Computational Linguistics (CICLING 2007), Lecture Notes in Computer Science, pages 288-298, Mexico City, Mexico. [ bib \| .pdf ]
	Beatrice Alex, Malvina Nissim, and Claire Grover. 2006. The impact of annotation on the performance of protein tagging in biomedical text. In Proceedings of the 5th International Conference on Language Resources and Evaluation (LREC 2006), Genoa, Italy. [ bib \| .pdf ]
	Claire Grover, Michael Matthews, and Richard Tobin. 2006. Tools to Address the Interdependence between Tokenisation and Standoff Annotation. In Proceedings of NLPXML-2006 (Multi-dimensional Markup in Natural Language Processing), pages 19-26. [ bib \| .pdf ]
	Claire Grover and Richard Tobin. 2006. Rule-based chunking and reusability. In Proceedings of the Fifth International Conference on Language Resources and Evaluation (LREC 2006), Genoa, Italy. [ bib \| .pdf ]
	Michael Matthews. 2006. Improving biomedical text categorisation with NLP. In Proceedings of the SIGs, The Joint BioLINK-Bio-Ontologies Meeting, ISMB 2006, pages 93-96, Fortaleza, Brazil. [ bib \| .pdf ]
	Leif Arda Nielsen. 2006. Extracting protein-protein interactions using simple contextual features. In Proceedings of the BioNLP workshop, HLT/NAACL 2006 - poster session, pages 120-121, New York City, USA. [ bib \| .pdf ]

This file has been generated by bibtex2html 1.80

	Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Stuart Roebuck, Richard Tobin, and Xinglong Wang. 2008a. Assisted curation: Does text mining really help. In Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, and Teri E. Klein, editors, BIOCOMPUTING 2008. Proceedings of the Pacific Symposium on Biocomputing, Kohala Coast, Hawaii, USA. [ bib \| .pdf ]
	Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Richard Tobin, and Xinglong Wang. 2008c. The ITI TXM corpora: Tissue expressions and protein-protein interactions. In Proceedings of the Workshop on Building and Evaluating Resources for Biomedical Text Mining at the 6th International Conference on Language Resources and Evaluation (LREC 2008), Marrakech, Morocco. [ bib \| .pdf ]
	Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Richard Tobin, and Xinglong Wang. 2008b. Automating curation using a natural language processing pipeline. Genome Biology, 9(Suppl 2):S10. [ bib \| http ]
	Barry Haddow. 2008. Using automated feature optimisation to create an adaptable relation extraction system. In Proceedings of BioNLP 2008, Columbus, Ohio. [ bib \| .pdf ]
	Barry Haddow and Beatrice Alex. 2008. Exploiting multiply annotated corpora in biomedical information extraction tasks. In Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008), Marrakech, Morocco. [ bib \| .pdf ]
	Florian Leitner, Martin Krallinger, Carlos Rodriguez-Penagos, Jörg Hakenberg, Conrad Plake, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hsi-Chuan Hung, William W. Lau, Calvin A. Johnson, Rune Sætre, Kazuhiro Yoshida, Yan Hua Chen, Sun Kim, Soo-Yong Shin, Byoung-Tak Zhang, William A. Baumgartner Jr., Lawrence Hunter, Barry Haddow, Michael Matthews, Xinglong Wang, Patrick Ruch, Frédéric Ehrler, Arzucan Özgür, Günes Erkan, Dragomir R. Radev, Michael Krauthammer, TahiBinh Luong, Robert Hoffmann, Chris Sander, and Alfonso Valencia. 2008. Introducing meta-services for biomedical information extraction. Genome Biology, 9(Suppl 2):S6. [ bib \| http ]
	Alexander A. Morgan, Zhiyong Lu, Xinglong Wang, Aaron M. Cohen, Juliane Fluck, Patrick Ruch, Anna Divoli, Katrin Fundel, Robert Leaman, Jörg Hakenberg, Chengjie Sun, Heng-hui Liu, Rafael Torres, Michael Krauthammer, William W. Lau, Hongfang Liu, Chun-Nan Hsu, Martijn Schuemie, and Lynette Hirschman. 2008. Overview of BioCreative II gene normalization. Genome Biology, 9(Suppl 2):S3. [ bib \| http ]
	Larry Smith, Lorraine K. Tanabe, Rie Johnson (nee Ando), Cheng-Ju Kuo, I-Fang Chung, Yu-Shi Lin, Roman Klinger, Christoph M. Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A. Struble, Richard J. Povinelli, Andreas Vlachos, William A. Baumgartner Jr., Lawrence Hunter, Bob Carpenter, Richard Tzong-Han Tsai, Hong-Jie Dai, Feng Liu, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafael Torres, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel Maña López, Jacinto Mata-Vázquez, and W. John Wilbur. 2008. Overview of BioCreative II gene mention recognition. Genome Biology, 9(Suppl 2):S2. [ bib \| http ]
	Xinglong Wang and Claire Grover. 2008. Learning the species of biomedical named entities from annotated corpora. In Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008), Marrakech, Morocco. [ bib \| .pdf ]
	Xinglong Wang and Michael Matthews. 2008b. Species disambiguation for biomedical term identification. In Proceedings of BioNLP 2008, Columbus, Ohio. [ bib \| .pdf ]
	Xinglong Wang and Michael Matthews. 2008a. Comparing usability of matching techniques for normalising biomedical named entities. In Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, and Teri E. Klein, editors, BIOCOMPUTING 2008. Proceedings of the Pacific Symposium on Biocomputing, Kohala Coast, Hawaii, USA. [ bib \| .pdf ]
	Beatrice Alex, Barry Haddow, and Claire Grover. 2007. Recognising nested named entities in biomedical text. In Proceedings of BioNLP 2007, Prague, Czech Republic. [ bib \| .pdf ]
	Claire Grover, Barry Haddow, Ewan Klein, Michael Matthews, Leif Arda Nielsen, Richard Tobin, and Xinglong Wang. 2007. Adapting a relation extraction pipeline for the BioCreAtIvE II task. In Proceedings of the BioCreAtIvE II Workshop 2007, Madrid, Spain. [ bib \| .pdf ]
	Barry Haddow and Michael Matthews. 2007. The extraction of enriched protein-protein interactions from biomedical text. In Proceedings of BioNLP 2007, Prague, Czech Republic. [ bib \| .pdf ]
	Xinglong Wang. 2007. Rule-based protein term identification with help from automatic species tagging. In Proceedings of the Conference on Intelligent Text Processing and Computational Linguistics (CICLING 2007), Lecture Notes in Computer Science, pages 288-298, Mexico City, Mexico. [ bib \| .pdf ]
	Beatrice Alex, Malvina Nissim, and Claire Grover. 2006. The impact of annotation on the performance of protein tagging in biomedical text. In Proceedings of the 5th International Conference on Language Resources and Evaluation (LREC 2006), Genoa, Italy. [ bib \| .pdf ]
	Claire Grover, Michael Matthews, and Richard Tobin. 2006. Tools to Address the Interdependence between Tokenisation and Standoff Annotation. In Proceedings of NLPXML-2006 (Multi-dimensional Markup in Natural Language Processing), pages 19-26. [ bib \| .pdf ]
	Claire Grover and Richard Tobin. 2006. Rule-based chunking and reusability. In Proceedings of the Fifth International Conference on Language Resources and Evaluation (LREC 2006), Genoa, Italy. [ bib \| .pdf ]
	Michael Matthews. 2006. Improving biomedical text categorisation with NLP. In Proceedings of the SIGs, The Joint BioLINK-Bio-Ontologies Meeting, ISMB 2006, pages 93-96, Fortaleza, Brazil. [ bib \| .pdf ]
	Leif Arda Nielsen. 2006. Extracting protein-protein interactions using simple contextual features. In Proceedings of the BioNLP workshop, HLT/NAACL 2006 - poster session, pages 120-121, New York City, USA. [ bib \| .pdf ]