@COMMENT{{This file has been generated by bib2bib 1.80}}
@COMMENT{{Command line: bib2bib -ob txm.bib -s year -s author -c 'keywords : "\btxm,"' publications.bib}}
@INPROCEEDINGS{Alex:2006:IAPP,
AUTHOR = {Alex, Beatrice and Nissim, Malvina and Grover, Claire},
TITLE = {The Impact of Annotation on the Performance of Protein Tagging in Biomedical Text},
BOOKTITLE = {Proceedings of the 5th International Conference on
Language Resources and Evaluation (LREC 2006)},
YEAR = 2006,
URL = {./papers/Alex2006Impact.pdf},
KEYWORDS = {txm, },
ADDRESS = {Genoa, Italy}
}
@INPROCEEDINGS{GROVER2006:TTA,
AUTHOR = {Grover, Claire and Matthews, Michael and Tobin, Richard},
TITLE = {{Tools to Address the Interdependence between Tokenisation
and Standoff Annotation}},
BOOKTITLE = {{Proceedings of NLPXML-2006 (Multi-dimensional Markup in
Natural Language Processing)}},
PAGES = {19--26},
YEAR = {2006},
URL = {./papers/Grover2006Tools.pdf},
KEYWORDS = {txm, ttt2, }
}
@INPROCEEDINGS{GROVER:2006:RBC,
AUTHOR = {Grover, Claire and Tobin, Richard},
TITLE = {Rule-Based Chunking and Reusability},
BOOKTITLE = {{Proceedings of the Fifth International Conference on
Language Resources and Evaluation (LREC 2006)}},
YEAR = {2006},
ADDRESS = {Genoa, Italy},
URL = {./papers/Grover2006Rulebased.pdf},
KEYWORDS = {txm, ttt2, }
}
@INPROCEEDINGS{MATTHEWS:2006:IBTC,
AUTHOR = {Matthews, Michael},
BOOKTITLE = {Proceedings of the SIGs, The Joint BioLINK-Bio-Ontologies Meeting, ISMB 2006},
TITLE = {Improving Biomedical Text Categorisation with {NLP}},
PAGES = {93-96},
ADDRESS = {Fortaleza, Brazil},
YEAR = 2006,
URL = {./papers/Matthews2006Improving.pdf},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{NIELSEN:2006:EPPI,
AUTHOR = {Nielsen, Leif Arda},
BOOKTITLE = {Proceedings of the BioNLP workshop, HLT/NAACL 2006 - poster session},
TITLE = {Extracting protein-protein interactions using simple contextual features},
PAGES = {120-121},
ADDRESS = {New York City, USA},
YEAR = 2006,
URL = {./papers/Nielsen2006Extracting-abstract.pdf},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{Alex:2007:RNN,
AUTHOR = {Alex, Beatrice and Haddow, Barry and Grover, Claire},
TITLE = {Recognising Nested Named Entities in Biomedical Text},
BOOKTITLE = {Proceedings of BioNLP 2007},
YEAR = 2007,
ADDRESS = {Prague, Czech Republic},
URL = {http://acl.ldc.upenn.edu/W/W07/W07-1009.pdf},
KEYWORDS = {txm, ttt2, }
}
@INPROCEEDINGS{Grover2007,
AUTHOR = {Grover, Claire and Haddow, Barry and Klein, Ewan and Matthews, Michael and Nielsen, Leif Arda and Tobin, Richard and Wang, Xinglong},
BOOKTITLE = {Proceedings of the BioCreAtIvE II Workshop 2007},
TITLE = {Adapting a Relation Extraction Pipeline for the {BioCreAtIvE} {II} Task},
ADDRESS = {Madrid, Spain},
YEAR = {2007},
URL = {./papers/Grover2007Adapting.pdf},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{Haddow:2007:TEE,
AUTHOR = {Haddow, Barry and Matthews, Michael},
TITLE = {The Extraction of Enriched Protein-Protein Interactions from Biomedical Text},
BOOKTITLE = {Proceedings of BioNLP 2007},
YEAR = 2007,
URL = {http://acl.ldc.upenn.edu/W/W07/W07-1019.pdf},
ADDRESS = {Prague, Czech Republic},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{WANG:2007:RBPT,
AUTHOR = {Wang, Xinglong},
TITLE = {Rule-based Protein Term Identification with Help from Automatic Species Tagging},
BOOKTITLE = {Proceedings of the Conference on Intelligent Text Processing and Computational Linguistics (CICLING 2007), Lecture Notes in Computer Science},
ADDRESS = {Mexico City, Mexico},
YEAR = {2007},
PAGES = {288-298},
URL = {./papers/Wang2007Rulebased.pdf},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{Alex:2008:ACD,
AUTHOR = {Alex, Beatrice and Grover, Claire and Haddow, Barry and Kabadjov, Mijail and Klein, Ewan and Matthews, Michael and Roebuck, Stuart and Tobin, Richard and Wang, Xinglong},
EDITOR = {Altman, Russ B. and Dunker, A. Keith and Hunter, Lawrence and Murray, Tiffany and Klein, Teri E.},
TITLE = {Assisted Curation: Does Text Mining Really Help},
BOOKTITLE = {BIOCOMPUTING 2008. Proceedings of the Pacific Symposium on Biocomputing},
YEAR = 2008,
ADDRESS = {Kohala Coast, Hawaii, USA},
URL = {http://psb.stanford.edu/psb-online/proceedings/psb08/alex.pdf},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{Alex:2008:,
AUTHOR = {Alex, Beatrice and Grover, Claire and Haddow, Barry and Kabadjov, Mijail and Klein, Ewan and Matthews, Michael and Tobin, Richard and Wang, Xinglong},
TITLE = {The {ITI} {TXM} Corpora: Tissue Expressions and Protein-Protein Interactions},
BOOKTITLE = {Proceedings of the Workshop on Building and Evaluating Resources for Biomedical Text Mining at the 6th International Conference on Language Resources and Evaluation (LREC 2008)},
YEAR = 2008,
ADDRESS = {Marrakech, Morocco},
URL = {./papers/Alex2008Corpora.pdf},
KEYWORDS = {txm, ttt2, }
}
@ARTICLE{Alex:2008:ACU,
AUTHOR = {Alex, Beatrice and Grover, Claire and Haddow, Barry and Kabadjov, Mijail and Klein, Ewan and Matthews, Michael and Tobin, Richard and Wang, Xinglong},
TITLE = {Automating Curation Using a Natural Language Processing Pipeline},
JOURNAL = {Genome Biology},
YEAR = {2008},
VOLUME = {9(Suppl 2)},
PAGES = {S10},
URL = {http://genomebiology.com/2008/9/S2/S10},
KEYWORDS = {txm, ttt2, }
}
@INPROCEEDINGS{Haddow:2008:UAF,
AUTHOR = {Haddow, Barry},
TITLE = {Using Automated Feature Optimisation to Create an Adaptable Relation Extraction System},
BOOKTITLE = {Proceedings of BioNLP 2008},
YEAR = 2008,
ADDRESS = {Columbus, Ohio},
URL = {http://www.aclweb.org/anthology-new/W/W08/W08-0603.pdf},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{Haddow:2008:EMA,
AUTHOR = {Haddow, Barry and Alex, Beatrice},
TITLE = {Exploiting Multiply Annotated Corpora in Biomedical Information Extraction Tasks},
BOOKTITLE = {Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008)},
YEAR = {2008},
ADDRESS = {Marrakech, Morocco},
URL = {./papers/Haddow2008Exploiting.pdf},
KEYWORDS = {txm, }
}
@ARTICLE{Leitner:2008:IMS,
AUTHOR = {Leitner, Florian and Krallinger, Martin and Rodriguez-Penagos, Carlos and Hakenberg, J\"org and Plake, Conrad and Kuo, Cheng-Ju and Hsu, Chun-Nan and Tzong-Han Tsai, Richard and Hung, Hsi-Chuan and Lau, William W. and Johnson, Calvin A. and S\ae{}tre, Rune and Yoshida, Kazuhiro and Chen, Yan Hua and Kim, Sun and Shin, Soo-Yong and Zhang, Byoung-Tak and Baumgartner Jr., William A. and Hunter, Lawrence and Haddow, Barry and Matthews, Michael and Wang, Xinglong and Ruch, Patrick and Ehrler, Fr\'ed\'eric and \"Ozg\"ur, Arzucan and Erkan, G\"une\c{s} and Radev, Dragomir R. and Krauthammer, Michael and Luong, TahiBinh and Hoffmann, Robert and Sander, Chris and Valencia, Alfonso},
TITLE = {Introducing Meta-Services for Biomedical Information Extraction},
JOURNAL = {Genome Biology},
YEAR = {2008},
VOLUME = {9(Suppl 2)},
PAGES = {S6},
URL = {http://genomebiology.com/2008/9/S2/S6},
KEYWORDS = {txm, }
}
@ARTICLE{Morgan:2008:OOB,
AUTHOR = {Morgan, Alexander A. and Lu, Zhiyong and Wang, Xinglong and Cohen, Aaron M. and Fluck, Juliane and Ruch, Patrick and Divoli, Anna and Fundel, Katrin and Leaman, Robert and Hakenberg, J\"org and Sun, Chengjie and Liu, Heng-hui and Torres, Rafael and Krauthammer, Michael and Lau, William W. and Liu, Hongfang and Hsu, Chun-Nan and Schuemie, Martijn and Hirschman, Lynette},
TITLE = {Overview of {BioCreative II} Gene Normalization},
JOURNAL = {Genome Biology},
YEAR = {2008},
VOLUME = {9(Suppl 2)},
PAGES = {S3},
URL = {http://genomebiology.com/2008/9/S2/S3},
KEYWORDS = {txm, }
}
@ARTICLE{Smith:2008:OOB,
AUTHOR = {Smith, Larry and Tanabe, Lorraine K. and Johnson (nee Ando), Rie and Kuo, Cheng-Ju and Chung, I-Fang and Lin, Yu-Shi and Klinger, Roman and Friedrich, Christoph M. and Ganchev, Kuzman and Torii, Manabu and Liu, Hongfang and Haddow, Barry and Struble, Craig A. and Povinelli, Richard J. and Vlachos, Andreas and Baumgartner Jr., William A. and Hunter, Lawrence and Carpenter, Bob and Tzong-Han Tsai, Richard and Dai, Hong-Jie and Liu, Feng and Chen, Yifei and Sun, Chengjie and Katrenko, Sophia and Adriaans, Pieter and Blaschke, Christian and Torres, Rafael and Neves, Mariana and Nakov, Preslav and Divoli, Anna and Ma\~{n}a-L\'opez, Manuel and Mata-V\'azquez, Jacinto and Wilbur, W. John},
TITLE = {Overview of {BioCreative II} Gene Mention Recognition},
JOURNAL = {Genome Biology},
YEAR = {2008},
VOLUME = {9(Suppl 2)},
PAGES = {S2},
URL = {http://genomebiology.com/2008/9/S2/S2},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{Wang:2008:LTS,
AUTHOR = {Wang, Xinglong and Grover, Claire},
TITLE = {Learning the Species of Biomedical Named Entities from Annotated Corpora},
BOOKTITLE = {Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008)},
YEAR = {2008},
ADDRESS = {Marrakech, Morocco},
URL = {./papers/Wang2008Learning.pdf},
KEYWORDS = {txm, ttt2, }
}
@INPROCEEDINGS{Wang:2008:SDB,
AUTHOR = {Wang, Xinglong and Matthews, Michael},
TITLE = {Species Disambiguation for Biomedical Term Identification},
BOOKTITLE = {Proceedings of BioNLP 2008},
YEAR = 2008,
ADDRESS = {Columbus, Ohio},
URL = {http://www.aclweb.org/anthology-new/W/W08/W08-0610.pdf},
KEYWORDS = {txm, }
}
@INPROCEEDINGS{Wang:2008:CUM,
AUTHOR = {Wang, Xinglong and Matthews, Michael},
EDITOR = {Altman, Russ B. and Dunker, A. Keith and Hunter, Lawrence and Murray, Tiffany and Klein, Teri E.},
TITLE = {Comparing Usability of Matching Techniques for Normalising Biomedical Named Entities},
BOOKTITLE = {BIOCOMPUTING 2008. Proceedings of the Pacific Symposium on Biocomputing},
YEAR = {2008},
ADDRESS = {Kohala Coast, Hawaii, USA},
URL = {http://psb.stanford.edu/psb-online/proceedings/psb08/wang.pdf},
KEYWORDS = {txm, }
}
This file has been generated by bibtex2html 1.80